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Showing posts with label Chemistry. Show all posts
Showing posts with label Chemistry. Show all posts

Tuesday, May 30, 2023

Integrating LLM into the Wolfram Language

Outline of examples of LLM interaction as 

https://writings.stephenwolfram.com/2023/05/the-new-world-of-llm-functions-integrating-llm-technology-into-the-wolfram-language/

Examples of computational Chemistry

https://blog.wolfram.com/2023/05/26/computational-chemistry-find-the-solution-with-wolfram-technologies/

Wednesday, August 24, 2022

Reshaping into 3D?

Saw this kind of thing proposed for packaging, with an Origami template,  could it work?

 Your Next Wooden Chair Could Arrive Flat, Then Dry into a 3D Shape

American Chemical Society

August 23, 2022

Researchers at Israel's Hebrew University of Jerusalem have developed a process in which flat wooden shapes produced by three-dimensional (3D) printers can be programmed to transform into complex 3D shapes. The researchers used a water-based “ink” comprised of wood-waste microparticles and plant-based binders in the printers; they found the pathway of the ink, print speed, and stacking of printed layers determined the final shape of the printed piece as its moisture content evaporates, and that these factors can be controlled to produce different shapes. Said Eran Sharon, one of the project’s principal investigators, “We hope to show that under some conditions we can make these elements responsive—to humidity, for example—when we want to change the shape of an object again.”  .... '

Thursday, April 14, 2022

Quantum Computers Get Smarter at Simulating Chemistry

Useful direction, having worked in a chem lab, would be useful to have an idea of what you will get. 

Quantum Computers Get Smarter at Simulating Chemistry

IEEE Spectrum, Charles Q. Choi, March 17, 2022

A team of scientists from multiple institutions used Google's Sycamore quantum processor to conduct the largest chemistry simulations involving quantum computers to date, tapping a new method that may better handle quantum circuits' noise. The researchers ran a fermionic quantum Monte Carlo algorithm in a hybrid classical-quantum computation framework so it would scale well. They employed 16 quantum bits (qubits) on the 53-qubit Sycamore system to calculate the ground state of H4 molecules, molecular nitrogen, and solid diamond molecules. Google Quantum AI's William Huggins said the hybrid approach can produce very precise ground-state estimates with more noise than the previous holder of the record for chemical simulations with quantum computing, the variational quantum eigensolver (VQE) algorithm, can tolerate.  ... ' 

Wednesday, April 06, 2022

Virtual Chemical Reaction Design

ew approaches to chemical design

Chemical Reaction Design Goes Virtual

Hokkaido University (Japan),March 14, 2022

A virtual ligand-assisted (VLA) screening method developed by researchers at Japan's Hokkaido University could reduce time spent on trial and error during transition metal catalyst development. The VLA screening method surveys a wide range of values for different properties to determine the most promising features of ligands, which are molecules bonded to the central metal atom of a catalyst. Virtual ligands mimic the presence of real ligands, but rather than being described by numerous individual constituent atoms, they are described using only their steric (space-filling) and electronic properties. Researchers then generate a contour map detailing the combination of steric and electronic effects a ligand should have to best catalyze a specific reaction, so chemists only must test real ligands meeting this criteria. "As the VLA screening can be conducted in silico, it would save a lot of time and resources in the lab," said Hokkaido's Satoshi Maeda.  ... '

Friday, June 11, 2021

Material Science Continues an Expansion

 Consider the value and complexity of multifunctional materials, and how much we are getting from understanding them in detail for design, manufacturing and delivery.  Ever new methods for delivering changes in chemistry,  physics, crystals and electronics.    

ACM TECHNEWS

A Blueprint for Designing, Synthesizing Multifunctional Materials   By Penn Today, University of Pennsylvania

Nanocrystal combinations can yield new multifunctional materials through an inverse design blueprint.

Researchers at the University of Pennsylvania (UPenn) and the University of Michigan developed the template by combining theory, computational simulations, chemical synthesis, and assembly.

UPenn's Katherine Elbert said the research intends to surmount the tendency for differently-sized and -shaped nanocrystals to cohere heterogeneously.

The researchers applied a library of laboratory-synthesized nanocrystals and simulations to refine the nanocrystal coating in order to induce ordered solids rather than heterogeneous aggregates.

By following specialized lab methods, the researchers formed a mixed and stable film from two distinct infrared active nanocrystals, highlighting the unexpected value of surface molecule modifications in triggering nanocrystal assemblies.

From Penn Today, University of Pennsylvania

Wednesday, May 12, 2021

Uncrackable Invisible Ink?

 Stuck me, since some of my earliest looks at code were in this realm.  Steganographic or hidden information.    Not combine it with AI based methods? 

An Uncrackable Combination of Invisible Ink, AI

American Chemical Society, May 5, 2021

Researchers have printed complexly encoded data using a carbon nanoparticle-based ink that can be read only by an artificial intelligence (AI) model when exposed to ultraviolet (UV) light. The researchers created the ‘invisible’ ink, which appears blue when exposed to UV light, using carbon nanoparticles from citric acid and cysteine. They then trained an AI model to identify symbols written in the ink and illuminated by UV light, and to use a special codebook to decode them. The model, which was tested using a combination of normal red ink and UV fluorescent ink, read the messages with 100% accuracy. The researchers said the algorithms potentially could be used for secure encryption with hundreds of unpredictable symbols because they can detect minute modifications in symbols.

Friday, March 26, 2021

Quantum Computing for Chemical Characteristics

An local example of the use of quantum simulation.

UC Chemists Use Supercomputers to Understand Solvents

University of Cincinnati News, Michael Miller, March 19, 2021

University of Cincinnati (UC) chemists Thomas Beck and Andrew Eisenhart used a supercomputer to understand the basic characteristics of an industrial solvent via quantum simulation. The researchers employed the university’s Advanced Research Computing Center and the Ohio Supercomputer Center to investigate glycerol carbonate. Said Eisenhart, "Quantum simulations have been around for quite a while. But the hardware that's been evolving recently—things like graphics processing units and their acceleration when applied to these problems—creates the ability to study larger systems than we could in the past." Eisenhart said the analysis provided insights into how small modifications to molecular structure can have larger effects on the solvent overall, "and how these small changes make its interactions with very important things like ions and can have an effect on things like battery performance."

Wednesday, January 06, 2021

AI Solves Quantum Chemistry Problem

 Heard this posed an an early 'monte carlo' simulation problem which had potential for solutions with quantum.

AI Solves Schrödinger's Equation, a Fundamental Problem in Quantum Chemistry

SciTechDaily

Scientists at Germany's Freie Universität Berlin (FU) have developed a deep learning artificial intelligence (AI) technique for calculating the ground state of the Schrödinger equation in quantum chemistry. FU's Jan Hermann said, "We believe that deep 'Quantum Monte Carlo', the approach we are proposing, could be equally, if not more successful [than functional theory]. It offers unprecedented accuracy at a still acceptable computational cost." The FU team's deep neural network is a novel approach for representing electronic wave functions, capable of learning the intricate patterns in which electrons surround nuclei by incorporating the functions' antisymmetry, or "Pauli's exclusion principle." FU's Frank Noé said, "Building the fundamental physics into the AI is essential for its ability to make meaningful predictions in the field. This is really where scientists can make a substantial contribution to AI, and exactly what my group is focused on."  ... 

Wednesday, October 21, 2020

Extending Insight from Neural Networks

 Some thoughts about how trained networks can be used to further analyse chemical structure.

Opening the Black Box of Neural Networks

Pacific Northwest National Laboratory, Allan Brettman

Pacific Northwest National Laboratory (PNNL) researchers used deep learning neural networks to model water molecule interactions, unearthing data about hydrogen bonds and structural patterns. The PNNL team employed 500,000 water clusters from a database of more than 5 million water cluster minima to train a neural network, relying on graph theory to extract structural patterns of the molecules' aggregation. The method provides additional analysis after the network has been trained, allowing comparison between measurements of the water cluster networks' structural traits and the predicted neural network, enhancing the network's understanding in subsequent analyses. PNNL's Jenna Pope said, "If you were able to train a neural network, that neural network would be able to do computational chemistry on larger systems. And then you could make similar insights in computational chemistry about chemical structure or hydrogen bonding or the molecules’ response to temperature changes.”

Wednesday, September 23, 2020

Advances in Splitting Water into Hydrogen/Oxygen efficiently

This could be a very big deal, considerable details at the link.  Had a job in a chem lab long ago that looked at this problem. 

Researchers develop a solar tech that splits water into hydrogen and oxygen with record efficiency   By Mark Anderson   in IEEE Spectrum

Israeli and Italian scientists have developed a renewable energy technology that converts solar energy to hydrogen fuel — and it’s reportedly at the threshold of “practical” viability.

The new solar tech would offer a sustainable way to turn water and sunlight into storable energy for fuel cells, whether that stored power feeds into the electrical grid or goes to fuel-cell powered trucks, trains, cars, ships, planes or industrial processes. ... '

Tuesday, September 15, 2020

Towards Robotic Chemistry

Better, faster, cheaper are the claims being made, with links to previous IBM work in the space.  Worked with a company analysis lab, and know the time and complexity involved.   This will replace experienced personnel.

Robotics, AI, and Cloud Computing Combine to Supercharge Chemical and Drug Synthesis
IBM looks to revolutionize industrial chemistry and in the process may have cut the discovery time for Covid-19 treatments in half  By Dexter Johnson  in  IEEE Spectrum

IBM must be brimming with confidence about its new automated system for performing chemical synthesis because Big Blue just had twenty or so journalists demo the complex technology live in a virtual room.

IBM even had one of the journalists choose the molecule for the demo: a molecule in a potential Covid-19 treatment. And then we watched as the system synthesized and tested the molecule and provided its analysis in a PDF document that we all saw in the other journalist’s computer. It all worked; again, that’s confidence.

The complex system is based upon technology IBM started developing three years ago that uses artificial intelligence (AI) to predict chemical reactions. In August 2018, IBM made this service available via the Cloud and dubbed it RXN for Chemistry.   ... " 

Saturday, September 12, 2020

Wolfram Alpha Notebook Turns One: Does Chemistry

This remains taking a close look at.   We explored WolframAlpha itself.  What I liked here was its use in specific context, like here: Chemistry.  Does this help or diminish teaching in the basics of analytical chemistry?  Note the inclusion of 'inferences' in your queries,  how should they be validated?

Peter Falloon, Jeremy Stratton-Smith:The Wolfram Alpha Chemistry Team
Wolfram|Alpha Notebook Edition Turns One: Now with Support for Chemistry, Demonstrations and 
Brad Janes, Wolfram|Alpha Math Content Manager
Peter Falloon, Data & Semantics Engineering
Jeremy Stratton-Smith, Math Developer, Wolfram|Alpha Math Content

The WolframAlpha Chemistry Team
Wolfram|Alpha Notebook Edition was released nearly a year ago, and we’re proud to share what the team has been working on since. In addition to the improvements made to Wolfram|Alpha itself, new input and output suggestions were added. There were parsing fixes, additions to the Wolfram|Alpha-to-Wolfram Language translation and some of the normal improvements one would expect. There are also some bigger features and interesting new capabilities that we will explore in a bit more detail here.

If you haven’t checked out Wolfram|Alpha Notebook Edition in a while, we’d like to invite you to revisit. With education looking a little different for many people right now, this could be a great time to explore this exciting new way to interface with Wolfram technologies.

One of the most useful features of any notebook-based computational environment is the ability to reuse the result of a prior calculation as the input to a new one. Using this, computations can be built up using an intuitive “step-by-step” approach and the need for cutting/pasting or retyping is reduced. 

In Wolfram|Alpha Notebook Edition, previous outputs can be referenced in a variety of ways, ranging from familiar Wolfram Language constructs such as %n or Out[n] to natural language expressions such as “simplify the last result,” “plot the above” or “square it.” In certain cases, an explicit reference needn’t even appear: e.g. if you input “y = sin(x^3)” followed by “make a plot,” Wolfram|Alpha Notebook Edition will infer that you want to make a plot of the previous equation. 

This functionality, which has been under continuous development since the release of this product, has recently been extended to leverage the powerful semantic capabilities that power the Suggestions Bar. This allows for context-dependent tailoring of results containing references to previous outputs based on the semantic types of those results. As we build out this functionality, you can expect to see Wolfram|Alpha Notebook Edition becoming even smarter in helping you to build up your computations.   .... "

Sunday, May 03, 2020

Sustainable Industrial Chemistry

A means of testing and formulating, using neural methods.

Researchers Design Intelligent Microsystem for Faster, More Sustainable Industrial Chemistry
NYU Tandon School of Engineering
April 13, 2020

New York University (NYU) Tandon School of Engineering researchers have developed a machine learning intelligent microsystem for modeling chemical reactions that could potentially offer faster, more sustainable industrial chemistry. The group combined a custom-designed, rapidly prototyped microreactor with automation and in-situ infrared thermography to study exothermic polymerization. The researchers created and applied artificial neural networks to simulate and optimize zirconocene-catalyzed exothermic polymerization based on experimental results. By coupling efficient microfluidic technology with machine learning algorithms to compile high-fidelity datasets based on minimal iterations, the researchers reduced chemical waste by two orders of magnitude and shortened catalytic discovery from weeks to hours. NYU Tandon's Ryan Hartman said the technique could lead to more efficient design and environmentally friendly plastics.  ... " 

Monday, November 25, 2019

3D Printing 'Living' Materials

Implications here fascinating, more details at the link.

3D Printing Technique Produces 'Living' 4D Materials
UNSW Newsroom
By Caroline Tang
November 19, 2019

Researchers at Australia's University of New South Wales (UNSW) Sydney and New Zealand's University of Auckland have combined three-dimensional (3D) and four-dimensional (4D) printing with a chemical process designed to create polymers to generate "living" resin. The researchers' controlled polymerization technique utilizes visible light to produce an environmentally friendly plastic or polymer. UNSW's Cerille Boyer said, "Our new method ... allows us to control the architecture of the polymers and tune the mechanical properties of the materials prepared by our process ... [and] also gives us access to 4D printing and allows the material to be transformed or functionalized." UNSW's Nathaniel Corrigan added that the system can finely control the 3D-printed material's molecules, so it can reversibly change shape and its chemical/physical properties under certain conditions. The researchers said the technique could be used to generate self-repairing and reusable objects, as well as biomedicines.    .... " 

Friday, August 09, 2019

Chemist Augmentation

The kind of augmentation we will continue to see.

Guided by AI, robotic platform automates molecule manufacture
by Becky Ham, Massachusetts Institute of Technology

Guided by artificial intelligence and powered by a robotic platform, a system developed by MIT researchers moves a step closer to automating the production of small molecules that could be used in medicine, solar energy, and polymer chemistry.

The system, described in the August 8 issue of Science, could free up bench chemists from a variety of routine and time-consuming tasks, and may suggest possibilities for how to make new molecular compounds, according to the study co-leaders Klavs F. Jensen, the Warren K. Lewis Professor of Chemical Engineering, and Timothy F. Jamison, the Robert R. Taylor Professor of Chemistry and associate provost at MIT.

The technology "has the promise to help people cut out all the tedious parts of molecule building," including looking up potential reaction pathways and building the components of a molecular assembly line each time a new molecule is produced, says Jensen.

"And as a chemist, it may give you inspirations for new reactions that you hadn't thought about before," he adds.    .... " 

 Technical Paper:  https://science.sciencemag.org/content/365/6453/eaax1566

Saturday, July 13, 2019

Quantum Computing and Chemical Industry

Was unaware of this particular connection.  Description below.  Improved Modeling.

The next big thing? Quantum computing’s potential impact on chemicals
The chemical industry is poised to be an early beneficiary of the vastly expanded modeling and computational capabilities of quantum computing. Companies must act now to capture the benefits.

Sent from McKinsey Insights .... 

Tuesday, April 30, 2019

Heat Transfer in Boiling Water

Had a  minor involvement, as a lab assistant, in studies about the transfer of heat,  at first in boiling water, and later applied to stellar atmospheres.  Its more complex than you think.

Getting to the bottom of the “boiling crisis”

New understanding of heat transfer in boiling water could lead to efficiency improvements in power plants.  David L. Chandler | MIT News Office

The simple act of boiling water is one of humankind’s oldest inventions, and still central to many of today’s technologies, from coffee makers to nuclear power plants. Yet this seemingly simple process has complexities that have long defied full understanding.

Now, researchers at MIT have found a way to analyze one of the thorniest problems facing heat exchangers and other technologies in which boiling water plays a central role: how to predict, and prevent, a dangerous and potentially catastrophic event called a boiling crisis. This is the point when so many bubbles form on a hot surface that they coalesce into a continuous sheet of vapor that blocks any further heat transfer from the surface to the water. ... "

Wednesday, December 19, 2018

VW Uses D-Wave for Quantum Chemistry

VW Solves Quantum Chemistry Problems on a D-Wave Machine 

IEEE Spectrum   By Mark Anderson

VW Solves Quantum Chemistry Problems on a D-Wave Machine

Scientists say their work offers a proof of principle for using D-Wave’s quantum computers to tackle even tougher chemistry problems  .... 

 " ... D-Wave computers are known as “quantum annealers,” running complex circuits using the machine’s 128,000 superconducting Josephson junctions. The integrated superconducting circuit, cooled down to thousandths of a degree above absolute zero, contains 2,048 quantum bits (qubits) and 6,016 interconnections (a.k.a. couplers) between qubits. It is called an annealer because the circuit begins in one state and then slowly transitions through to its final state, with its individual qubits representing distillations of an answer. ... "

Researchers at Volkswagen in Germany and the U.S. have used a D-Wave 2000Q quantum computer to solve rudimentary quantum chemistry problems. The researchers ran D-Wave computations that identified the ground-state energies of molecular hydrogen and lithium hydride. Although both molecules are well known and well studied, the Volkswagen researchers established an increasingly computational route to exploring chemistry in the quantum realm. The researchers also enumerated a list of quantum chemistry simulation goals that sufficiently robust quantum computation should address, such as: designing next-generation batteries; optimizing solar cells via detailed study of photosynthesis, and faithfully simulating complex molecules without restoring to approximations that conventional computers use to make such simulations tractable.  .... " 

Saturday, December 08, 2018

Robot Scientist Creates New Materials

Machines doing design, and the creative process.  How do they interact with people?

A Robot Scientist Will Dream Up New Materials 
Technology Review   By Will Knight

Cambridge, MA-based startup Kebotix has created machine learning software that learns material chemistry from three-dimensional models of molecules with known properties in order to design novel compounds. Kebotix feeds the molecular models to a neural network that learns a statistical representation of their properties, which can devise new examples aligned with existing models; a second network screens out undesirable designs, then a robotic system tests the chemical structures of the remaining models. The outcomes are input back into the machine learning channel so it can yield results closer to target properties. MIT's Klavs Jensen said the use of such automation in chemistry "won't replace the expert, but you'll be able to do things a lot faster."  ...

Wednesday, December 05, 2018

Protein Folding with Alphabet Deep Mind

A big, big deal we took a look at for industry, even suggested a neural net possibility, but methods were still too primitive at the time. This still not a compete solution,  but looks to be a step forward.

Alphabet's DeepMind AI Algorithm Wins Protein-Folding Contest 
V3.co.uk   By Dev Kundaliya

DeepMind's latest artificial intelligence (AI) software won the Protein Structure Prediction Center's Critical Assessment of Structure Prediction contest by accurately predicting the three-dimensional structures into which proteins can be folded. The AlphaFold algorithm predicted the configurations of 25 out of 43 proteins, making it far more accurate than any other software. AlphaFold was designed and taught to model target shapes from scratch, without using previously solved proteins as templates. The DeepMind team used two distinct neural networks to predict the proteins' structures. DeepMind's Demis Hassabis said, "We've not solved the protein folding problem, this is just a first step. It's a hugely challenging problem, but we have a good system and we have a ton of ideas we haven't implemented yet."    ... "